EpiCure

Napari plugin to manually correct epithelia segmentation in movies

Documentation in the wiki

Installation¶

Install plugin¶

To install EpiCure on a fresh python virtual environment, type inside the environement:

pip install epicure

Then launch Napari, and the plugin should be visible in the Plugins list.

If you already have an environment with Napari installed, you can also install it directly in Napari>Plugins>Install/Uninstall plugins

Install code¶

To have the code to be able to modify it, clone this repository. You can use pip install -e . so that everytime you update the code, the plugin will be updated.

Usage¶

Refer to the wiki for documentation of the different steps possible in the pipeline.

This napari plugin was initialized with Cookiecutter using [@napari]'s [cookiecutter-napari-plugin] template.